Welcome to the Single Cell Core (SCC). Harvard Medical School and the Department of Systems Biology is proud to be offering the inDrops single cell sequencing technology from the laboratory of Dr. Allon Klein to the greater scientific community.

Projects are initiated on a first come, first serve basis upon receipt of your application. We will do our best to respond to applications within a week to book an initial consultation.

Is your inDrops project published? Let us know!

Check out our Publications page. Let us know if we should add your publication to our list.

Users no longer need to bring enzymes for inDrops runs starting July 2018. Enzyme costs are now built into our encapsulation rates. While our rates and run costs are therefore increasing by ~25%, due to our bulk enzyme discount this will result in a roughly 5% cost savings to the user as well as eliminating the hassle of needing to bring enzymes on the day of your run.



By popular demand 10x Genomics Chromium is now an option at the Single Cell Core. We offer 10x Single Cell RNA-Seq or scATAC-Seq as either self-service or staff-assisted. Users will need to buy their own reagents for their runs and will be able to sign up for time to run themselves. Stay tuned for exciting updates!

Updated User Agreement

All users will be reqiured to review and bring or e-mail us a signed copy of our updated User Agreement.

Policy Regarding Storage of Backup Encapsulated Samples

The SCC has a new policy to store backup encapsulated cells for up to 1 year after your run date. If you need your backup emulsion please come retrieve it from the SCC within a few months of your run. Exceptions may be made if needed for your project, but this needs to be arranged with the SCC.


Junction labels